Great, thank you for your feedback.
Can you send us a sample program with a joint movement to a joint target? We can implement this for the Elite CS controller.
In the meantime, you can make sure that generating programs does not give you any issues by right clicking on a program and selecting "Recalculate Targets". This updates all joint values for Cartesian targets to match the current setup (based on the updated coordinate systems, tools, etc).
Can you send us a sample program with a joint movement to a joint target? We can implement this for the Elite CS controller.
In the meantime, you can make sure that generating programs does not give you any issues by right clicking on a program and selecting "Recalculate Targets". This updates all joint values for Cartesian targets to match the current setup (based on the updated coordinate systems, tools, etc).